FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2840815
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8700.022.5282968
CTGTCGC9350.022.0851279
TGTCGCC8750.021.99956710
ATACCGT1154.1172865E-521.307686
GTATACG850.003787138320.5929051
GTCTCGC9400.019.7385181
GTCTTGC18700.019.6568641
TAATACT3250.019.3876484
GTCGCCC9600.017.86423311
GTGTAAG7650.017.8471851
GTGTTAA5950.016.4743251
TCGCTCT10950.016.303924
CACGCGT1300.002289520616.1563746
GTATAGA3602.7284841E-1115.5590861
GTATATA3151.1059456E-915.5590851
CGTAGAC1350.002944962415.5579882
GTCTAGC7350.015.2415511
TCTCGCT11850.015.0656472
GTATTAA4450.014.947211
CTCGCTC10950.014.7054973
Produced by FastQC (version 0.11.5)