FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3434006
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10300.030.9213148
CTGTCGC11800.027.2876369
TGTCGCC11550.027.27222810
GTCTCGC11300.026.3361571
GTCGCCC11000.024.81772611
TCGCTCT11700.022.7379384
TCGCCCA13750.021.89050712
GTACGAA800.00266309121.8822461
GTATACG1003.927036E-421.0069561
GTACTAC3100.020.3293131
GTCTTGC23050.020.2019161
TCTCGCT13050.019.8501382
CTCGCTC12550.019.8033183
GTATTAG6150.019.3560051
CGCTCTG11950.019.3330065
CCGTACT1451.1170005E-519.3128034
CGTGTTA4200.019.16631510
TTATACT5000.018.9024074
GTGTATA10750.018.8899771
GTATAAA7600.018.4271561
Produced by FastQC (version 0.11.5)