FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2937105
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTACG604.9832417E-429.1695822
TCTGTCG8250.025.8787338
GCGCTAA700.001225564525.0050541
CTGTCGC9550.024.554929
TGTCGCC9900.022.97974810
GTATAAT4200.022.5045491
GTCTCGC9200.022.4501881
GTCGCCC9250.022.32427411
GTCTTGC18650.021.5861321
GTATTAC3650.021.1001551
GTACGGA1506.379905E-721.0042441
GGTATAC2850.020.8814141
TCGCTCT10050.020.5493164
GTATTAT5550.018.9227431
TCTCGCT10850.018.7115482
TCGCCCA10800.018.47218112
TAGTACG950.0072090518.4228944
GTCGTAG1150.001007158518.264561
GTACTAA3700.017.9766061
GTGTTAG12700.017.9170071
Produced by FastQC (version 0.11.5)