FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3474273
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9600.024.791098
GTCTCGC8950.024.6426831
GTCTTGC22300.023.7051411
TGTCGCC10400.022.54787810
CTGTCGC11500.021.9125359
GTCGCCC10200.020.93118711
TCGCTCT10800.020.419724
TCGCCCA11000.020.36345712
GTATTAT5200.019.5238361
GTATAGA6500.019.3891871
GTGTATA9500.018.0568891
TCTCGCT11450.018.037632
GTATAGT5450.017.9858931
GTATTAA7100.017.7506641
CGTGTTA4000.017.49984610
GTATATA8650.017.4029461
CTCGCTC11600.017.2008483
GTATTAG7450.016.916741
GTGTTAG15550.016.885011
TTCACCG6450.016.824225
Produced by FastQC (version 0.11.5)