FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3659977
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10550.026.2079648
GTCTCGC10850.024.1979851
CTGTCGC12100.024.0077449
TGTCGCC13150.021.82462110
TCGCTCT12100.020.8291264
GTCGCCC12150.020.16417311
GCGTATA1055.462944E-420.0036661
TCTCGCT12200.019.7976262
GTATTAC5950.019.4153231
GTACTAC3750.018.6700881
GTCTTGC24700.018.5661561
GTCTTAC7800.018.4008081
GTATTAA5950.018.2386361
GTATAGG6350.018.192311
TCGCCCA13450.017.95500212
GTCTAGC10150.017.9343221
GTGTATA10150.017.5894321
CTCGCTC13550.017.5668353
GTACTAT5800.017.5032061
CGCTCTG13400.017.502255
Produced by FastQC (version 0.11.5)