FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3638997
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10700.025.1856618
CTGTCGC11400.023.9461759
TGTCGCC11450.023.84160610
GTCTCGC12200.023.243891
TCGCTCT13450.022.122724
TATACCG800.00266561421.878725
GTACTAT5050.021.490871
GTCTTGC22450.020.7404881
TCGCCCA12150.020.45165412
GTCGCCC11550.019.99900211
TATACTG5550.018.9221365
TCTCGCT14450.018.8962062
GTATAGA6300.018.8939171
CGCTCTG13000.018.8493585
CTCGCTC14350.018.5397383
GTATAAT5700.018.4259571
GTGTACG2306.0717866E-918.2657321
GCGTAGT2357.923518E-917.8770981
GTATTAT6550.017.1037881
GGTATAC4550.016.9275841
Produced by FastQC (version 0.11.5)