FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3280186
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9600.030.9890778
CTGTCGC11000.028.6358959
GTCGTAC755.5842604E-528.0050931
TGTCGCC11250.027.9999710
GTCTCGC10800.025.930641
GTCGCCC11500.024.95649311
GTATAGA4500.024.8934151
TCGCTCT11500.023.1328774
GTCTTGC21850.022.2694951
TCGCCCA13600.021.3602712
GTGTTAG12650.020.4780331
TCTCGCT12850.020.4304852
GTATAAC3450.020.2935451
CGCTCTG12200.019.2233435
GTATTAG5350.018.9754121
GTGTTAT8000.018.3783421
GTATTAT5150.018.3528521
CTCGCTC13950.018.0664233
GTATTAA6300.017.7810121
TTGCTCT29200.017.3819734
Produced by FastQC (version 0.11.5)