FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3946969
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10650.032.2053838
GTCTCGC11750.026.8153341
CTGTCGC13300.025.2631869
GTATTAT5900.024.3282241
TGTCGCC13750.023.927310
TCGCTCT12650.022.6900714
GTCTTGC26000.022.2171921
GTCGCCC13650.022.05130611
TCTCGCT14000.021.7525042
GTATAGA6700.020.900841
CTCGCTC13550.020.1496663
GTATTAG7650.020.1358431
TCGCCCA15700.019.84078612
TAATACT6450.018.9941944
CGTTTCG950.00721359118.4210729
TATAATA4850.018.0433142
GTATAAT5900.017.801141
GTGTTAG19300.017.595151
CGCTCTG14400.017.5017955
GTATAGG6150.017.0775171
Produced by FastQC (version 0.11.5)