FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3427450
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8650.033.582858
CTGTCGC10400.026.2492459
TGTCGCC10700.026.1674710
GTCTCGC11100.025.5491241
GTCGCCC9550.024.18778611
GTCTTGC21750.022.5363061
TCGCTCT12250.021.4323334
GTATCGG1356.012893E-620.7477111
TCTCGCT12700.020.6729182
CGCTCTG13450.019.5201555
GTATTAG6650.019.4802281
CTCGCTC13750.018.839673
TCGCCCA12850.018.79323412
GTACTAG4500.018.672941
GTATTAA5850.018.5532421
GTATTAT6250.018.486211
GCGTAGT3051.8189894E-1218.3668251
CGTGTTA4800.018.22864310
GTATATA8950.017.9948731
GTATAAA7800.017.505881
Produced by FastQC (version 0.11.5)