FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3607389
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11600.027.7584518
CTGTCGC13250.026.1507849
TGTCGCC13450.024.46115710
GTCGCCC11200.024.37552611
GTCTCGC12700.023.7160931
GTGTTAG17150.022.667691
GTATAGA6800.022.6616841
TCGCTCT12250.022.5709784
GTATTAA6100.021.8173581
TCGCCCA12550.021.75345612
GTCTTGC25450.021.7429121
TAATACT6800.021.1025184
TTATACT6900.019.7822134
TAGTACG900.0052796219.4440564
CGTGTTA4050.019.01249510
GTATTAT5750.018.8817521
GTTAGCC13850.018.6997283
TCTCGCT15200.018.6537882
TGTTAGC16750.018.3904952
CGCTCTG15250.018.3602895
Produced by FastQC (version 0.11.5)