FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3611448
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTACG657.9435005E-426.934182
TCTGTCG11050.021.8560438
GTCTCGC11200.021.268781
TCGCTCT12000.020.708274
CTGTCGC12850.020.7020449
TGTCGCC13400.019.85205710
GTCGCCC12400.018.63026211
TATAATA3250.018.3152432
GTATAAG6350.018.205051
CTCGCTC13000.018.0401543
GTCTTGC22400.017.9846291
GTATTAG6400.016.968111
CCGTGTA14150.016.82089870
CGCCGTA1250.001763291816.80041168
TCGCCCA14200.016.76167112
TCTCGCT14300.016.6502192
GCTCCGT33800.015.947870
CGCTCTG13000.015.8845665
GTGTTAC7950.015.8630651
GGATACG1807.103839E-515.5693031
Produced by FastQC (version 0.11.5)