FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3046530
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC12450.039.327861
GTCTTGC25800.035.4441681
TCTGTCG13900.033.6684958
TCGCTCT15350.032.366934
CTCGCTC16150.029.8719123
TCTCGCT17450.029.7111362
GTCTTAC10850.027.8727841
GTATAGG10100.025.6650371
CGCTCTG17400.025.2430235
TCTGTCA32600.024.514928
TTGCTCT34200.024.0015624
GAGTGCA69900.023.3808086
GTGTTAC11400.023.3699421
TAATACT8750.023.0414984
GTCTCAC31400.022.7021141
GGAGTGC65550.022.6284735
GTATTAC6400.022.5014631
CTCGATC10000.022.3196228
GTCCTAG13250.022.2806951
GGCTAGA15600.022.1552891