Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005344554 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3046530 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTCGC | 1245 | 0.0 | 39.32786 | 1 |
GTCTTGC | 2580 | 0.0 | 35.444168 | 1 |
TCTGTCG | 1390 | 0.0 | 33.668495 | 8 |
TCGCTCT | 1535 | 0.0 | 32.36693 | 4 |
CTCGCTC | 1615 | 0.0 | 29.871912 | 3 |
TCTCGCT | 1745 | 0.0 | 29.711136 | 2 |
GTCTTAC | 1085 | 0.0 | 27.872784 | 1 |
GTATAGG | 1010 | 0.0 | 25.665037 | 1 |
CGCTCTG | 1740 | 0.0 | 25.243023 | 5 |
TCTGTCA | 3260 | 0.0 | 24.51492 | 8 |
TTGCTCT | 3420 | 0.0 | 24.001562 | 4 |
GAGTGCA | 6990 | 0.0 | 23.380808 | 6 |
GTGTTAC | 1140 | 0.0 | 23.369942 | 1 |
TAATACT | 875 | 0.0 | 23.041498 | 4 |
GTCTCAC | 3140 | 0.0 | 22.702114 | 1 |
GGAGTGC | 6555 | 0.0 | 22.628473 | 5 |
GTATTAC | 640 | 0.0 | 22.501463 | 1 |
CTCGATC | 1000 | 0.0 | 22.319622 | 8 |
GTCCTAG | 1325 | 0.0 | 22.280695 | 1 |
GGCTAGA | 1560 | 0.0 | 22.155289 | 1 |