FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4007238
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9250.025.3491348
GTCTCGC10650.023.9941981
CGAATCG2103.6379788E-1223.33129170
GCGAATG5350.022.89519170
CTGTCGC11700.022.7330519
TGTCGCC11400.021.18235610
TCGCTCT11650.021.0326634
TACCGCG850.003794308520.5864337
GTCGCCC10600.020.46990611
GTCTTGC23500.020.2583481
GTATTAA8000.020.128011
GTACTAG4700.020.109391
GGTATAC6550.019.7739491
GTATAGC6300.019.4473551
TCGCCCA12600.019.44274312
TAATACT8650.019.019714
GTGTTAG15750.018.6694581
CGCTCTG12250.018.5737445
GTCTTAC9400.017.8750131
GTATTAC7400.017.5026171
Produced by FastQC (version 0.11.5)