FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3991621
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9300.024.463568
TGTCGCC9850.021.67672710
CTGTCGC10450.021.4367249
GTATAAT7250.020.7617151
GCGTACG850.003791035220.5894999
TAGACCG1205.721184E-520.4171525
GTATACG1408.249011E-620.0029831
GTCTTGC21700.019.8416651
GTATTAG9300.019.572811
GTCTCGC11050.019.3241481
GTCGCCC9500.018.79109811
TCGCCCA10400.018.17464612
TCGCTCT11500.017.956954
GTGTAAT11750.017.2791731
GTATTAT7350.017.1454121
GTATTAC6950.017.1248551
GTATAGA6600.016.9722271
CTCGCTC12950.016.4868773
GTGTTAG18050.016.2905161
TCTCGCT13300.015.5266862
Produced by FastQC (version 0.11.5)