FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4292193
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11250.028.622778
TATACCG906.178676E-627.223385
TGTCGCC12450.025.86545610
TATACGG1101.0176136E-625.4556265
GTCTTGC26900.024.5964181
CTGTCGC12750.024.4321259
GTCTCGC11550.024.2476881
GTCGCCC11050.023.75749411
TCGCTCT13150.023.1568784
TCTCGCT13900.021.1527182
TCGCCCA12900.020.6217512
CTCGCTC14450.020.3468863
CGCTCTG14950.020.1346345
GTATTAG9850.019.5473941
GTATTAC6600.019.0950571
TACCGCG1150.001008657718.2607947
GTGTAAG13900.018.1334361
GTATCGG1551.98295E-518.068441
TTGCTCT37950.017.8004934
GTACTAC4800.017.50381
Produced by FastQC (version 0.11.5)