FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3769185
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC10700.024.2099111
TCTGTCG9300.023.7104328
GTCTTGC21800.022.641641
GTATTAC5950.021.7685761
CTGTCGC11650.021.3311529
TGTCGCC11200.021.2509610
TCGCTCT11050.020.905924
GTCGCCC9900.020.50624711
GTATTAG8550.020.4714761
TCTCGCT13100.019.2377642
GTGTAAA16300.018.4695421
TCGCCCA11950.018.45296112
GTATTAT7250.018.348091
TAATACT7500.018.200824
CTCGCTC12600.018.0566083
GTATAAC4550.017.6954541
GTGTAAT11350.017.5802171
GCGGTAC1000.00969109117.5010223
GTACTAG4250.017.2971941
GTATAGA7100.017.2565881
Produced by FastQC (version 0.11.5)