FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3587199
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG7550.028.276498
GTCTCGC10100.023.2229371
GTATAAC3750.022.4049341
CTGTCGC11000.021.6350989
TGTCGCC11000.021.31693510
TATATCG1356.0321327E-620.74010770
GTATAAT6300.020.5600831
GTCTTGC21950.020.4145181
TCGCTCT11050.019.9591464
ATCTCGT11750.019.06324670
GTGTTAC9750.019.029831
GTATTAG6650.018.9515441
GTCGCCC10650.018.4026811
TTACACT11800.018.0972064
TCTCGCT11850.018.0208472
GTCTTAC9750.017.2345641
GTATTAC5550.017.0307791
CTCGCTC12300.016.7923153
GTATTAA6900.016.7428191
GTATACG2108.575098E-716.6703381
Produced by FastQC (version 0.11.5)