FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3587199
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8950.033.241948
CTGTCGC10400.028.94389
GTCTCGC9650.026.8463761
TGTCGCC11300.025.39989510
TCGCTCT9600.024.4276624
GTCGCCC10350.024.01123411
TCGCCCA11950.023.72540312
TCTCGCT10850.022.2585932
GTCTTGC22450.020.4284881
GTATAAC3800.020.268441
CTCGCTC11350.020.0442493
GTGTTAC10350.018.6038821
TACCCCG2456.6211214E-1018.5718695
CGCTCTG11400.018.1144645
GTGTAAG12300.017.9315031
ATAGTAC4100.017.9270043
GTGTAAT9850.017.4157071
GTGTAAA14350.017.3215891
CCGTGTA23550.016.94236870
CGACGAT1250.00176379116.79969670
Produced by FastQC (version 0.11.5)