FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2211010
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATACG1501.0913936E-1148.3294034
TCTGTCG7450.042.8162738
GTCTCGC7850.042.7659151
TCGCTCT8150.037.358924
GTCTTGC14950.031.2426871
AATACGC1952.6110683E-729.741845
CTCGCTC9950.029.1446743
TCTCGCT10500.029.0009172
CGCTCTG9850.026.4959055
CGCTCTA1100.00967684226.3620875
GTCTCAC18300.026.3210051
GTATTAG6500.025.8240341
CTGTCGC11850.025.6946939
GTGTAAA10100.025.2904341
GTCTAGA9100.024.8616491
GTATTAT6200.024.719361
GTGTTAG11100.024.326991
TTAGACG1801.5219384E-424.16474
GTTCTAA6050.024.125941
TAACACT9050.024.031194
Produced by FastQC (version 0.11.5)