FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3672643
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA16600.034.78886870
ATCTCGT27650.026.0757370
TATCTCG35950.020.15364569
TCTGTCG8450.019.4672938
GTCTCGC9550.019.065481
TCGCTCT10050.018.4605734
GTATAAG6700.017.2459411
TTACGCT1452.4382673E-416.8991724
CGTTTCG1250.001763686716.799869
CTCGCTC10650.016.763163
TGTCGCC10650.016.10315110
GTATTGG7050.015.8931011
CTGTCGC10700.015.7008039
TCTCGCT11750.015.1946732
ACCGTAG1859.04569E-515.13459616
GTCTTGC19300.015.05804351
GTATATA5400.014.9135781
GTACTAT4700.014.8997811
GTATAAT5900.014.8366461
GTGTTAA8950.014.4752621
Produced by FastQC (version 0.11.5)