FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3879361
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA8600.029.30279570
TCTGTCG9850.024.8731758
ATCTCGT14400.024.06288770
CTGTCGC11750.022.9362439
TGTCGCC12550.020.63751610
GTCGCCC12350.019.55471611
TCGCCCA13200.019.35612112
GTCTTGC23250.019.1252421
TATCTCG18800.018.6173269
GTATTAT8150.018.0433791
TCGCTCT11450.018.0363864
GTCTCGC11300.017.9711441
GTATTAC4950.016.9758761
GTCCGGA2501.7005732E-816.8061161
GTATATA7300.016.7869341
GTATTAA7850.016.5028231
TCGTTAA1300.002292462216.1534817
GTACGAG1755.608887E-516.0058271
GTATAAC4200.015.8390981
CTACGCT1807.152936E-515.55680754
Produced by FastQC (version 0.11.5)