FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3882271
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA17800.037.163370
ATCTCGT32150.028.52283970
TCTGTCG9650.025.3885298
CTGTCGC11200.021.8749399
TATCTCG43200.021.3083669
TAAGTCG900.00527680719.4458925
GTCTCGC10900.019.2714611
TGTCGCC11500.019.1738610
GTATAAG7500.018.2051071
GTCGCCC11300.017.34530811
TCGCTCT12950.017.2985864
GTATTAA5900.016.614831
GTATTAT7250.016.41841
GTCTTGC20850.015.9517171
TCGCCCA14050.015.94301612
GTATAGG5150.015.6354551
GTATTGG7100.015.2859791
GTGTAAC7600.015.2016331
TCTATCG1400.00375613214.9999588
GTATAAA8750.014.8041531
Produced by FastQC (version 0.11.5)