FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3789982
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT23900.030.16740270
CGTATCG703.4932218E-529.99964310
TCTCGTA12350.029.75712670
TCTGTCG9900.025.4545788
GTATCGA1102.9260165E-522.27246311
TATCTCG34150.022.03516670
CTGTCGC12550.021.1952489
TGTCGCC12500.019.87976510
AATATCG3000.019.83335970
GTCTCGC10400.019.5269851
TCGCTCT12400.018.3492184
GTCTTGC22000.017.9844131
GTCGCCC11900.017.64684911
TTACACT10850.017.0990524
GTATTAG6600.016.9764391
TACGCAA1653.399363E-516.96949610
GGTATAC4550.016.92981
TCGCCCA13250.016.9054612
GTATTAT6100.016.6459561
GTACGGA1503.1519806E-416.3398231
Produced by FastQC (version 0.11.5)