FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2981871
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA8400.034.16686270
ATCTCGT14350.024.87819170
TCTGTCG7400.024.1213558
TCGAGCG800.002668304621.8747618
TATCTCG18750.021.65345670
CTGTCGC8800.019.0906989
GTCTTGC14950.018.7336031
GTCTCGC8200.017.931141
GTTCGGA1401.8635059E-417.504211
CGATATG1854.754629E-617.02712470
TGCGAAA1250.001763613416.79981412
GTATAAC2954.3655746E-1016.6141661
GTATTAG5550.016.4003411
CGCTCTG10150.016.2088935
GTGTACG1957.82612E-616.1577321
GTGTTAG11500.016.1343151
TCGCTCT10650.016.105274
TGTCGCC9450.015.9257510
GTATAAT4750.015.4774071
GTGTAAA9550.015.3963741
Produced by FastQC (version 0.11.5)