FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3865128
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA17150.036.7359170
ATCTCGT32300.028.71612270
TATCTCG41100.022.48249469
TCGCTCT12250.018.0019934
TCTGTCG8450.017.8103188
GTCTCGC11400.017.5071471
CTGTCGC9750.017.2304489
GTATAAG7300.016.7876741
GTATTAA6050.016.7837121
GTATTAG7150.016.1604441
GTATAGA5200.015.4870911
ATATCTC59900.015.48445268
CTCGCTC12600.015.27946953
TCTCGCT13700.014.8201182
TACACTG13550.014.7246875
TGTCGCC10900.014.44927110
GTATTGG6800.014.417651
GTCCGGT1708.1560196E-414.417651
GTATTAT5650.014.2536071
GTCTTGC23400.014.2152041
Produced by FastQC (version 0.11.5)