FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3101086
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8650.029.1325538
CTGTCGC9700.023.814119
TCGCTCT11550.023.6360444
TGTCGCC9600.023.33301510
TCTATCG901.9300783E-423.3330158
GTCTCGC10150.023.1158081
GTCGCCC9100.022.30523111
CTATCGA850.003792493120.5879559
GTATTAA5200.019.5296731
CGCTCTG11400.019.3418435
TCTCGCT12200.018.3615912
TCGCCCA11900.018.2332812
CTCGCTC12200.017.7849243
GTGTAAT6500.017.7787361
GTATAGA4750.017.6936721
GTGTATA9200.017.1287251
GTCTTAC7200.017.0229911
GTCTTGC18350.016.9845581
GCGTATG1704.369679E-516.4793991
TAATACT5400.016.2034844
Produced by FastQC (version 0.11.5)