FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3162045
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA6950.030.71892570
TATACGG1301.6082595E-724.2326742
ATCTCGT13300.024.21013370
TCTGTCG9150.024.098358
CTATACG901.926406E-423.3395981
CTGTCGC10750.021.162789
TGTCGCC10750.020.837210
GTCTCGC10450.020.1010881
GTCGCCC10600.018.4908511
GTATTAG6150.018.216271
GTATAGT6000.017.5046981
TCGCTCT11900.017.354034
GTATAAC3850.017.2773651
CATCTCG21000.016.99972370
GTGTTAG13650.016.927621
TAGACCG1250.001762774216.8010565
TACGCAA1503.1613404E-416.33332410
CGCTCTG11850.016.2457475
GTGTAAA10150.016.2112461
GTATATA6500.016.1581821
Produced by FastQC (version 0.11.5)