FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3078049
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA2950.020.16932970
CGAACGA900.00527958219.4439714
TCTGTCG6900.018.7676588
CGTTTCG1702.122626E-618.5289619
GTCTCGC8150.018.473311
GCGTAAT1150.001005958618.2678451
TATGGCG1150.001007606318.2633915
GTATAAT6550.017.1057661
GTCTTGC17600.016.9098641
GGTATAC3800.016.5852781
ATCTCGT5700.016.57881470
CTGTCGC8350.016.3469079
GTATTAA6300.016.1172641
GTATTAG6100.016.0717091
GTATAGA5250.016.006111
GTATAAG5750.015.8321311
GTGTAAG8550.015.1519831
GTATAAC3251.717126E-915.0826811
TATAATA4900.015.0025592
ATAACGT1400.003752378715.0020723
Produced by FastQC (version 0.11.5)