FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2983219
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATACG703.494275E-529.9980094
TCGCTCT9200.028.5307164
GTCTCGC9300.028.2348181
TCTGTCG8450.024.4362498
CTCGCTC10100.022.8693873
TCTCGCT10950.022.0533312
CGCCGTA2259.094947E-1221.77633368
GTACGGA1709.301766E-820.594811
CTGTCGC11250.020.5319719
TGTCGCC11250.020.22020310
CGCGGTA1055.464401E-420.00269743
CGCTCTG11100.019.2329585
GCCGTAT2555.4569682E-1119.21441369
GTCGCCC9850.019.1855811
GTATTAG7000.019.0060671
ATACCGT950.00721599318.4198326
GTCTTGC18400.018.0764241
TCGCCCA11150.017.89029112
TCGCCGT2751.6189006E-1017.81767
GTCGCCG2751.6189006E-1017.81766
Produced by FastQC (version 0.11.5)