FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3279312
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8850.026.8921748
TCTCGTA6550.025.11482270
CTGTCGC10100.022.8708789
TGTCGCC9850.022.74105610
GTCTCGC9700.022.7405661
TCGCTCT10850.020.9705664
GTGTTAC8500.020.1841131
GTATTAG8400.020.0075761
GTCGCCC10050.019.85069511
TCTCGCT10600.019.8142912
GTCTTGC20700.019.79011
GTATTAT6150.018.7876011
GTATAAG6600.018.5676361
AGTACCG950.00720778518.4235325
TCGCCCA11450.018.34056512
ATCTCGT10400.018.17330670
GTATAGA5700.017.8137631
GTACTAA4550.017.6990091
GTGTAAA12250.017.149351
CTCGCTC11850.017.1331083
Produced by FastQC (version 0.11.5)