Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005345298 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3047002 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTTGC | 2345 | 0.0 | 28.55437 | 1 |
GTCTCGC | 1240 | 0.0 | 27.290323 | 1 |
GTACGGA | 235 | 1.4146699E-6 | 24.510637 | 1 |
TCGCTCT | 1375 | 0.0 | 23.563637 | 4 |
TTACACT | 1355 | 0.0 | 23.380074 | 4 |
GTATTAA | 955 | 0.0 | 23.371729 | 1 |
TCTGTCG | 1295 | 0.0 | 22.795368 | 8 |
CGCTCTG | 1580 | 0.0 | 22.784811 | 5 |
GTGTAAC | 825 | 0.0 | 22.690908 | 1 |
TACGGTA | 195 | 2.7418497E-4 | 22.153845 | 7 |
GTACTAA | 630 | 0.0 | 21.714285 | 1 |
GTGTAAA | 1830 | 0.0 | 21.639343 | 1 |
GGAGTGC | 5360 | 0.0 | 21.22388 | 5 |
CTCGCTC | 1530 | 0.0 | 21.17647 | 3 |
TAGCCCG | 310 | 6.682658E-7 | 20.903227 | 5 |
GAGTGCA | 5915 | 0.0 | 20.571428 | 6 |
GTATAAT | 880 | 0.0 | 20.454546 | 1 |
GGCTGGA | 7945 | 0.0 | 20.390184 | 1 |
GTATTAT | 920 | 0.0 | 20.347826 | 1 |
GTCTCAC | 2695 | 0.0 | 20.304268 | 1 |