FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1490262
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG4200.039.1664058
CTGTCGC4650.035.3761069
TGTCGCC4750.035.36818310
GTCGCCC4950.028.98970411
GCGCGTT500.0072112827.99981113
GTATAGG2600.026.9301241
TCGCCCA5750.024.95635412
CGAACTA1001.3991974E-524.49983670
GTATAGA2300.024.35421
CCTTACG750.001831568123.3370912
CGTTACC800.00266761821.87485519
TTAATAC1957.8034645E-1021.539043
GTATTAC2301.2732926E-1121.3099251
GTCTTGC8400.021.2555641
GTGTAAA4300.021.1683311
TCGCTCT4200.020.8331954
GTACGAT850.003785539220.5936261
GTCTAAT2750.020.3689671
TAGGCCG1558.753377E-720.3224435
GTCTCGC3800.020.2684631
Produced by FastQC (version 0.11.5)