FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences968637
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGTA200.006951546352.5003137
TTATCGG200.006952965652.497642
TCGAGTA404.592709E-543.75251459
CGACGAC1056.7714063E-726.668270
TCTGTCG2900.026.5518828
CTGTCGC3200.024.0626439
GCCGTTC750.00183276123.333478
CGCTCTG3250.022.6166845
GTCTCGC2800.022.5059411
TCGCTCT3450.022.3212784
GTATTAG2207.2759576E-1222.2786081
GTCTTGC6000.022.172521
GTATAGA1656.7781E-821.2177241
TATACTG1506.379687E-721.0012075
GTCGCCC3050.020.65585911
CGTGTAT850.0037902120.58835810
TGTCGCC3400.020.58835810
GAATAAT2750.020.3690131
GTATAAG1408.230243E-620.0052811
CTAGTAC1055.4616894E-420.0021823
Produced by FastQC (version 0.11.5)