FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1297854
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCGTA708.696388E-735.0024071
CTATTAC1502.4772817E-823.3349381
GTCTCGC3100.022.58221
GTATTGC2207.2759576E-1222.274261
GTACTAA1102.9222821E-522.274261
TTGCGCT952.78183E-422.1050811
GTGTATA3700.021.7582531
GTATAAT2453.092282E-1120.0013771
GTCTTGC7750.019.8723341
GTCTTAC3450.019.2766881
GTCCGGG2002.4410838E-819.2513241
GTATTAT2555.4569682E-1119.2170091
GTGTAGG4250.018.942481
GTATAAC1301.05721214E-418.847451
CGTGTAG5200.018.84672570
TCTCGCT4100.018.781782
GTATAAG2254.62569E-918.6679521
CTGTCGC3600.018.4720699
TCGCTCT3650.018.219734
CCGTGTA7200.017.98665670
Produced by FastQC (version 0.11.5)