FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1108670
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTAA657.953049E-426.9266151
CGTCGTG657.959338E-426.9229727
CGAGTAT808.6706284E-526.24989970
GTCTCGC2800.023.7531221
TCGCTCT3550.022.6759684
CTGTCGC3800.021.1841289
GGCTAGT2151.1459633E-1021.1655711
GTATTAC1506.3768675E-721.002761
TCTGTCG3200.020.781178
GTATAGT1901.3526005E-820.2658231
GTACAAG2453.092282E-1120.002631
TAACACT3450.019.2752884
TGTCGCC3850.019.09083610
GTACTAC1501.4946998E-518.669121
GTCTTGC7350.018.573871
GTGTTAT2659.458745E-1118.4929961
GTATAGG1903.0026422E-718.4234751
GTATTAA2306.0681487E-918.263271
GTGTAGT3450.018.263271
TCTCGCT3450.018.2624452
Produced by FastQC (version 0.11.5)