FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1199581
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTCTA400.002418500135.00287638
TCTGTCG3250.031.2294318
GTACGGG500.007206134528.003471
CCGTCGT500.007212002827.9987989
TACCCCG1154.901085E-827.3935575
TGTCGCC3400.026.76355710
TAATACT2000.026.2521574
GTCTTGC7800.025.1313151
TAGTACT1052.0394275E-523.3352494
CTGTCGC4050.023.3323339
GTCTCGC3350.022.9879231
GGACGCG800.00266594221.8767976
GTGTAAC2259.094947E-1221.7804761
GAATAAC1656.791561E-821.214751
GTCGCCC4100.020.48692711
TCGCCCA3950.020.37887412
TATACTG1558.742991E-720.3242515
GTATTAA1901.3529643E-820.2656691
TAGCACG1257.821784E-519.601614
GTGTAGA3400.019.5612451
Produced by FastQC (version 0.11.5)