FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1068468
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACCCG200.006947969652.5075154
GTACTAG1451.8189894E-1128.9696641
GTCTCGC2800.026.2537571
GTACTAT1101.0155254E-625.4581871
GTATAAG1401.1890734E-825.0035781
TCTGTCG3150.024.4422238
TTAATAC1807.2559487E-921.3919493
TCGCTCT3150.021.1141324
TAATACT2001.0677468E-921.0030044
CGTGTTA1003.934553E-420.99907310
GTATAGA1709.30504E-820.591181
GTATTAT1751.2633791E-720.0028611
GTGTAGG3500.020.0028611
GCCGATC1055.469565E-419.9981828
GTGTTAG4750.019.8975831
GTACATA1951.8228093E-819.7464141
GTATTAA1601.1846241E-619.6903171
TATAGAG1651.5907572E-619.0936412
GTCTTGC7700.019.0936411
TAGTAGT1651.5907572E-619.0936414
Produced by FastQC (version 0.11.5)