FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1063029
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG3350.028.207768
TAGACCG500.00720499928.0040824
CTGTCGC3800.026.7093969
TGTCGCC4100.025.60867310
GTATACT1251.0984877E-725.2036764
GTATAAC1451.7254933E-824.1425881
GTCTCGC3500.024.004631
GGTATAC1202.165054E-623.3378331
GTATAAT1352.3099165E-723.3378331
TAACACG1102.9199029E-522.2759764
TCTATAC1604.9025402E-821.8781913
GTATTAA1506.372593E-721.0040511
GTGCGGA850.00378634620.5922071
TCTCGCT3600.020.4196452
TATACTG2101.9608706E-920.0029165
GTCGCCA1055.4677494E-419.99915311
TAATACT1601.1845823E-619.690374
CGTGTTA1257.8281984E-519.59917310
TCGCTCT3950.019.4965134
GTATTAG2353.783498E-1019.3654381
Produced by FastQC (version 0.11.5)