FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences947626
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATCCG450.00430822731.11094
TCGGGTA450.00430822731.110917
GTACTAT1151.496077E-624.3502311
GTTCATA1752.0008883E-1024.002371
CGCAATC1752.0190782E-1023.99983817
GTTAGAC1052.0402455E-523.3331763
GTTAGGC1253.0912615E-622.3998493
GTATAAC1102.920533E-522.2749251
ATAATAC1102.9229142E-522.2725773
GTCTTGC6200.022.0183051
ACCGACT800.002666909521.8748518
TCTGTCG2750.021.6362178
GTATTAC1709.3066774E-820.590271
GTATAGG1558.737625E-720.3245891
GTATTGG1751.2635974E-720.0019761
GCGCAAT1751.264998E-719.99986516
GGTATAC1601.1848388E-619.6894451
GTAGGAC1601.1860375E-619.6873663
GGATAGT1257.818577E-519.6019341
ATCCCGC900.005276401519.4443132
Produced by FastQC (version 0.11.5)