FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1083221
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATAAG404.594917E-543.7495414
TCTGTCG2600.030.9612128
GTCTCGC3850.030.9159011
TCGCTCT3250.030.1563134
TCTCGCT4200.025.8378312
CTGTCGC3400.025.7350239
CGCTCTG3550.025.6347145
GTCGCCC3150.025.55528611
TGTCGCC3300.025.45427710
AAGACCG851.3086355E-424.7067625
TCGCCCA3400.023.67622212
GTCTTGC5800.022.9360871
GTATTAT2155.456968E-1222.7957171
CTCGCTC4000.022.752913
GCGTTGG952.7771227E-422.1101321
GTCCGGG1656.7831934E-821.2167931
TAGTACT1656.793016E-821.2138564
GTATTAA1859.940777E-920.8153951
GTGTTAC2201.5643309E-1020.6863751
GTGCTAC2201.5643309E-1020.6863751
Produced by FastQC (version 0.11.5)