FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2426308
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6850.029.6337288
CGATATG1455.966285E-1026.55219370
CTGTCGC7700.025.454479
TGTCGCC7700.024.54538210
GTATACG1403.2803655E-722.506891
ATACCGC800.002664210321.8803466
GTCTCGC6950.020.6538051
GTATTAG5000.020.3062171
GTATAAT4200.020.0061261
GTCGCCC6400.019.1405711
GTACTAC2757.2759576E-1219.0967561
TAATACT4050.019.0177764
GTATATA6650.018.4266971
TATACTG4850.018.046395
GTGTAAT6650.017.9002191
GGACCGT2056.660848E-717.0773436
TTATACT4550.016.9279124
GTGTATA7900.016.84061
TCGCTCT7700.016.8229854
ACGATAT22200.016.71200670
Produced by FastQC (version 0.11.5)