FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2290313
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATCG652.1053585E-532.30672570
TCTGTCG7000.025.9992228
GTATTAT3250.025.8527161
TGTCGCC7300.023.97188410
TCGCTCT6900.023.8455924
CTGTCGC8200.023.0480929
GTCTCGC7400.022.708471
GTCGCCC7650.021.50262311
CGCTCTG8700.021.3263245
TACGCTG1656.7921064E-821.2165815
CGTAGAC1003.9296944E-421.0044142
GTATAGG3950.020.3849221
GTATTGA4050.019.8815921
CTCGCTC8750.019.604123
GGTATAC3400.019.5637911
GTCTTGC13700.019.165451
ATACACG2203.4979166E-919.0949234
TATCTCG8300.018.97533670
TCGCCCA8200.018.77992612
CCTACGC1501.4948204E-518.6705913
Produced by FastQC (version 0.11.5)