FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2761452
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5050.029.1087748
TCGTTCG500.007212256527.9998736
CGCGAAT500.007212256527.9998712
ATTTACG750.001833535723.33364732
GTATTAG5850.022.7386421
CTGTCGC7550.021.7879779
GGATACG1454.6064451E-721.7275771
TGTCGCC7900.020.8226910
GTCGCCC7150.020.06983611
GTCTCGC9000.019.8364731
GTATTAC4450.019.6660351
GTCTTGC15950.019.5328731
GTATATA6350.018.7431241
TCGCTCT7850.018.7267064
GTATAAG5050.018.7158341
GTGTTAC6400.018.5966951
TAATACG1150.001008291818.2614464
GGTATAC3650.018.2220631
GTCTCAC20400.018.017561
TCGCCCA8750.017.99991612
Produced by FastQC (version 0.11.5)