FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2576421
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6050.023.7189168
GGATACG1052.0389005E-523.3377721
GTTTACG1003.9304097E-421.0039941
GTATAAC2302.8376235E-1019.7863711
CTGTCGC6950.019.6402119
TGTAGAT16950.017.55155470
GTCTTGC14400.017.5033281
GTATTAA3053.8198777E-1117.2163891
GTATTAT3950.016.8386461
GTGTAAA8400.016.6698381
TCGCTCT7150.016.6432914
GTATAAG4000.016.628161
GTCGCCC7450.016.4428911
CGTGTAA1503.1611373E-416.33327110
TGTCGCC8600.016.27900710
GGTATAC2854.9385562E-915.9679481
GTTCTAC4900.015.7172761
GTACTAG2452.476063E-715.7172761
TACACCG1350.002948009915.5554955
GTGTATA6400.015.31541251
Produced by FastQC (version 0.11.5)