FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1488755
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTGT605.1227224E-447.9901737
TTAACTA450.00991524747.9901665
GTCTAGT750.00153648338.3921365
TAACTAC750.00153648338.3921366
TATAAGA2650.038.029952
GTATAAG2700.037.3256871
GTCCTAT2404.7293724E-1132.9932441
GTATAAA1102.540794E-432.720571
GTGTATA1352.249877E-531.9934489
GTCCTAG950.00489569630.3095841
TCTAGTG950.00489569630.3095846
TAAGAGA3101.8189894E-1230.1873664
CTTCTAG1050.00798239227.4229551
TAGTCTG1607.169783E-526.994471
ATAAGAG3505.456968E-1226.7373813
GTACAGA2001.1264796E-525.1948411
ATTAAGG1450.001278743824.8225043
GAGTTAC1450.001278743824.8225047
TCAGAGT1500.001557928923.9950854
AGAGTTA1550.001885450423.221056