FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2721215
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATATG2550.037.05957470
TCTGTCG7950.028.6143048
CTGTCGC9200.023.2048599
TGTCGCC9200.022.82445110
GTCTTGC14400.021.3956131
GTCGCCC9150.021.03674311
GATATCG3100.020.32299270
GTATTAG5050.019.412041
TATTTCG1107.4787746E-419.09164631
TCGCCCA9900.018.73603212
GTCTCGC8700.018.5115641
TCGCTCT9650.018.1397484
TATCTCG10950.017.58026570
GTATTAA5400.017.50551
GTATAAT4200.017.50551
GTATTAC4650.017.317271
GTGTAAT7200.017.0192381
GGCGTAC1250.001759726916.805281
GTGTAAA10900.016.7024961
CGCTCTG10300.016.6551065
Produced by FastQC (version 0.11.5)