FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2276729
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5450.025.0451498
CGCTAAT851.3098282E-424.70516812
TGTCGCC6100.024.09766610
CTGTCGC6050.023.7183259
TCTATCG850.003792524620.587648
GTATAGC3150.020.0060141
TCGCCCA7150.019.57985312
GTCTAGT5550.019.5554261
GTCTTGC12750.019.4960561
TCGCTCT6300.018.3328044
AATACCG1150.001008626918.2603425
GTATAAA5250.018.0054111
GTCTCGC6250.017.9253881
GTCCGGA2155.579932E-817.912361
TAGTACT2601.4642865E-917.4994954
GTCGCCC6850.017.37176111
GTATTAC3850.016.3685571
GTATTAT4800.016.046491
GTATTAG4850.015.88106251
GTCTTAC4900.015.719011
Produced by FastQC (version 0.11.5)