FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2427754
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6100.024.0970218
TCGCTCT7150.020.5612624
GTCTCGC7400.020.3404751
CTGTCGC7700.019.5443679
GTACGGT1107.474907E-419.0929933
GTATAGA4450.018.8788551
GTATTAG3750.018.6690881
TGTCGCC7550.018.54201510
GTACGGA1150.001007579318.2632391
TACACCG1150.001007997318.2621125
GTATAAG4250.018.1199991
GTCGCCC7200.017.98511111
GTGTAAC4700.017.874661
GTATAAC3600.017.5022721
GTATATA5650.017.3473851
GTCTTAC5550.017.0292361
GTCTTGC14300.016.6455171
CTCGCTC7800.016.6043763
TCTCGCT8450.016.5698572
TCGCCCA8550.015.96402512
Produced by FastQC (version 0.11.5)