FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2540241
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATCG1151.4624675E-930.43377970
TGTACCG1052.0380578E-523.3389975
TCTGTCG6400.022.9675438
GTCTTGC13800.020.2951811
GTATTAC2800.020.0052491
GTCTCGC9550.019.795771
ATACCGT1107.4683246E-419.0955456
GTACTAT3700.018.9238831
CGTTACA950.007202037618.4258862
TCGCTCT9200.018.2653034
CTGTCGC8650.018.2071349
TGTCGCC8250.017.81724410
CGCTCTG9000.017.5042485
GTGTAGA7650.017.3901821
GTACTAC2451.3262252E-817.1473561
GTATAGA4100.017.0776521
ACCGTAA1250.001764006616.7991168
GTCGCCC8150.016.74791511
CTCGCTC10050.016.7208063
GTCTCAC16100.016.5260751
Produced by FastQC (version 0.11.5)