FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2514456
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG7350.029.52348
GTCGCCC7750.025.2899711
TGTCGCC8650.025.08635510
GTCTCGC7550.024.5726131
TCGCCCA7950.023.77372712
TCGCTCT8400.022.9177154
CTGTCGC9500.022.4733729
CGCCGTA2056.002665E-1122.19437268
TCTCGCT8800.021.4795362
CTCGCTC9450.020.7421023
GTACTCG1055.464424E-420.0025061
CGCTCTG9900.018.738235
GTCTTGC13800.018.5168111
TGTACCG950.007211025318.4218965
CCGTATG950.007213507318.4207959
TTACACT6050.017.3561654
CGACGAA2651.886292E-917.16923170
GTATTAC4350.016.8986681
GTATAAG4150.016.8695831
GTTCCGA1250.001761902116.8021051
Produced by FastQC (version 0.11.5)